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Crystal structure of the ubiquitin-specific protease encoded by murine cytomegalovirus tegument protein M48 in complex with a ubquitin-based suicide substrate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 200 MM MAGNESIUM FORMATE, 14% PEG 3350, pH 7.50
Crystal Properties Matthews coefficient Solvent content 1.95 36.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.907 α = 73.37 b = 57.298 β = 85.37 c = 67.279 γ = 88.54
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97.4 0.09 8.3 4.2 52323 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 84.2 0.27 3.5 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 50 51609 1076 97.4 0.157 0.156 0.1666 0.214 0.2259 RANDOM 10.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 -0.1 0.04 -0.5 0.26 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.307 r_dihedral_angle_3_deg 12.781 r_dihedral_angle_4_deg 12.445 r_dihedral_angle_1_deg 6.355 r_scangle_it 3.462 r_scbond_it 2.488 r_angle_refined_deg 1.442 r_mcangle_it 1.379 r_mcbond_it 1.257 r_angle_other_deg 0.939
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.307 r_dihedral_angle_3_deg 12.781 r_dihedral_angle_4_deg 12.445 r_dihedral_angle_1_deg 6.355 r_scangle_it 3.462 r_scbond_it 2.488 r_angle_refined_deg 1.442 r_mcangle_it 1.379 r_mcbond_it 1.257 r_angle_other_deg 0.939 r_symmetry_vdw_other 0.245 r_nbd_refined 0.207 r_nbd_other 0.199 r_symmetry_hbond_refined 0.189 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.168 r_symmetry_vdw_refined 0.16 r_chiral_restr 0.087 r_nbtor_other 0.085 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4755 Nucleic Acid Atoms Solvent Atoms 707 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling HKL2Map phasing