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Crystal structure of the DNA repair enzyme UV Damage Endonuclease
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1 X PHOSPHATE BUFFERED SALINE, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2 38.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.352 α = 106.14 b = 48.7 β = 94.36 c = 68.763 γ = 114.2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-02-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97800,0.97850,0.91840 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 23.64 73.8 0.04 20.2 3.9 56321 17.29
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 23.6 0.32 3 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.55 20 53443 2860 73.8 0.184 0.182 0.1844 0.212 0.2136 RANDOM 19.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 -0.18 1.05 -0.87 0.56 2.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.01 r_dihedral_angle_4_deg 17.8 r_dihedral_angle_3_deg 13.021 r_dihedral_angle_1_deg 5.635 r_scangle_it 4.918 r_scbond_it 3.17 r_mcangle_it 1.623 r_angle_refined_deg 1.508 r_mcbond_it 1.481 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.01 r_dihedral_angle_4_deg 17.8 r_dihedral_angle_3_deg 13.021 r_dihedral_angle_1_deg 5.635 r_scangle_it 4.918 r_scbond_it 3.17 r_mcangle_it 1.623 r_angle_refined_deg 1.508 r_mcbond_it 1.481 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.176 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.1 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4457 Nucleic Acid Atoms Solvent Atoms 356 Heterogen Atoms 16
Software Software Software Name Purpose ARP/wARP model building MOSFLM data reduction SCALA data scaling AFRO phasing CRUNCH2 phasing BP3 phasing ARP/wARP phasing REFMAC phasing