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Structure of S. cerevisiae Trm112 protein, a methyltransferase activator
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 1.2M KH2PO4 PH 7 PROTEIN CONCENTRATION 10MG/ML IN 10 MM TRIS-HCL PH 8, 10UM ZNCL2, 6MM B-MERCAPTOETHANOL
Crystal Properties Matthews coefficient Solvent content 2.8 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.6 α = 90 b = 38.46 β = 102.24 c = 45.81 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 97.7 0.13 6.2 2.5 17182 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.75 99 0.52 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 19.67 16318 860 100 0.2 0.198 0.1967 0.236 0.2359 RANDOM 17.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.82 -0.43 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.562 r_dihedral_angle_4_deg 17.116 r_dihedral_angle_3_deg 14.174 r_dihedral_angle_1_deg 4.742 r_scangle_it 3.475 r_scbond_it 2.127 r_mcangle_it 1.359 r_angle_refined_deg 1.296 r_mcbond_it 0.831 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.562 r_dihedral_angle_4_deg 17.116 r_dihedral_angle_3_deg 14.174 r_dihedral_angle_1_deg 4.742 r_scangle_it 3.475 r_scbond_it 2.127 r_mcangle_it 1.359 r_angle_refined_deg 1.296 r_mcbond_it 0.831 r_nbtor_refined 0.304 r_nbd_refined 0.213 r_symmetry_vdw_refined 0.171 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1065 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing