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Structure of a Streptococcus pneumoniae fucose binding module
Crystallization Crystal Properties Matthews coefficient Solvent content 1.73 28.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.581 α = 90 b = 60.39 β = 90 c = 99.674 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 20 99.8 0.06 14 4.6 37211 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 99.7 0.36 3.3 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.54 51.99 37211 1992 98.3 0.156 0.154 0.167 0.198 0.2093 RANDOM 17.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.38 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 14.16 r_scangle_it 4.534 r_scbond_it 3.008 r_mcangle_it 2.014 r_angle_refined_deg 1.627 r_mcbond_it 1.403 r_angle_other_deg 0.906 r_symmetry_vdw_other 0.334 r_nbd_other 0.263 r_symmetry_vdw_refined 0.255
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 14.16 r_scangle_it 4.534 r_scbond_it 3.008 r_mcangle_it 2.014 r_angle_refined_deg 1.627 r_mcbond_it 1.403 r_angle_other_deg 0.906 r_symmetry_vdw_other 0.334 r_nbd_other 0.263 r_symmetry_vdw_refined 0.255 r_symmetry_hbond_refined 0.21 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.17 r_chiral_restr 0.111 r_nbtor_other 0.087 r_bond_refined_d 0.018 r_gen_planes_other 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2198 Nucleic Acid Atoms Solvent Atoms 495 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement MOLREP phasing