☰ Navigation Tabs
Crystal structure of Trypanosoma cruzi arginine kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1M80 PDB ENTRY 1M80
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 2.5 M AMMONIUM SULFATE, 0.1 M TRIS HCL, PH 7.5
Crystal Properties Matthews coefficient Solvent content 3.7 67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.697 α = 90 b = 86.697 β = 90 c = 138.823 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 70 92 0.08 20.8 9.3 44532
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 67.6 0.41 2.7 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1M80 1.9 75.16 42208 2235 92.2 0.196 0.194 0.1934 0.218 0.2161 RANDOM 33.57
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.24 0.48 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.13 r_dihedral_angle_4_deg 26.598 r_dihedral_angle_3_deg 14.661 r_dihedral_angle_1_deg 6.208 r_scangle_it 4.507 r_scbond_it 2.895 r_angle_refined_deg 1.606 r_mcangle_it 1.57 r_mcbond_it 0.983 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.13 r_dihedral_angle_4_deg 26.598 r_dihedral_angle_3_deg 14.661 r_dihedral_angle_1_deg 6.208 r_scangle_it 4.507 r_scbond_it 2.895 r_angle_refined_deg 1.606 r_mcangle_it 1.57 r_mcbond_it 0.983 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.214 r_nbd_refined 0.202 r_symmetry_hbond_refined 0.154 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.103 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2667 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing