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Structure of casein kinase gamma 3 in complex with inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CHL PDB ENTRY 2CHL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 10% PEG10K, 0.20 M MGCL2, 0.10 M TRIS PH=7.0, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.029 α = 90 b = 56.029 β = 90 c = 220.089 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE 2006-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 32.6 97.4 0.1 11 4.7 29640
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.05 83.2 0.47 1.9 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CHL 1.95 29.26 28061 1501 97.5 0.182 0.179 0.1811 0.234 0.2329 RANDOM 16.39
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.11 0.22 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.299 r_dihedral_angle_4_deg 18.972 r_dihedral_angle_3_deg 13.718 r_scangle_it 8.857 r_scbond_it 7.365 r_dihedral_angle_1_deg 6.914 r_mcangle_it 5.024 r_mcbond_it 3.976 r_angle_refined_deg 1.517 r_angle_other_deg 0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.299 r_dihedral_angle_4_deg 18.972 r_dihedral_angle_3_deg 13.718 r_scangle_it 8.857 r_scbond_it 7.365 r_dihedral_angle_1_deg 6.914 r_mcangle_it 5.024 r_mcbond_it 3.976 r_angle_refined_deg 1.517 r_angle_other_deg 0.94 r_symmetry_vdw_refined 0.255 r_symmetry_vdw_other 0.234 r_nbd_other 0.196 r_nbd_refined 0.195 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.159 r_symmetry_hbond_refined 0.113 r_chiral_restr 0.086 r_nbtor_other 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2434 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing