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Structure of casein kinase gamma 3 in complex with inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CHL PDB ENTRY 2CHL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 10% PEG10K, 0.20 M MGCL2, 0.1 M TRIS PH=7.0, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.724 α = 90 b = 56.724 β = 90 c = 223.344 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2006-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 49.1 95.9 0.05 22.4 6.3 99653
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.4 79.7 0.3 3.8 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CHL 1.3 49.15 94592 4952 96 0.132 0.13 0.1415 0.158 0.1676 RANDOM 15.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.11 -0.23 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.23 r_dihedral_angle_4_deg 19.068 r_dihedral_angle_3_deg 11.331 r_scangle_it 9.115 r_scbond_it 7.939 r_mcangle_it 6.274 r_dihedral_angle_1_deg 6.044 r_mcbond_it 5.175 r_angle_refined_deg 1.419 r_angle_other_deg 0.918
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.23 r_dihedral_angle_4_deg 19.068 r_dihedral_angle_3_deg 11.331 r_scangle_it 9.115 r_scbond_it 7.939 r_mcangle_it 6.274 r_dihedral_angle_1_deg 6.044 r_mcbond_it 5.175 r_angle_refined_deg 1.419 r_angle_other_deg 0.918 r_symmetry_vdw_refined 0.378 r_symmetry_vdw_other 0.311 r_nbd_refined 0.224 r_nbd_other 0.193 r_nbtor_refined 0.188 r_symmetry_hbond_refined 0.178 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.086 r_nbtor_other 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2413 Nucleic Acid Atoms Solvent Atoms 474 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing