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structure of a light-induced intermediate of the BLUF domain of the rhodobacterial protein AppA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.96 58.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.4 α = 90 b = 126.4 β = 90 c = 64.9 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 100 0.07 20 7 6700 4.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3.03 99.8 0.25 6 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.95 19.86 6362 335 100 0.19 0.188 0.1868 0.228 0.2255 RANDOM 49.97
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.93 0.96 1.93 -2.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.216 r_dihedral_angle_3_deg 21.653 r_dihedral_angle_4_deg 18.692 r_dihedral_angle_1_deg 6.299 r_scangle_it 2.635 r_scbond_it 1.778 r_angle_refined_deg 1.422 r_mcangle_it 0.933 r_mcbond_it 0.534 r_symmetry_vdw_refined 0.334
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.216 r_dihedral_angle_3_deg 21.653 r_dihedral_angle_4_deg 18.692 r_dihedral_angle_1_deg 6.299 r_scangle_it 2.635 r_scbond_it 1.778 r_angle_refined_deg 1.422 r_mcangle_it 0.933 r_mcbond_it 0.534 r_symmetry_vdw_refined 0.334 r_nbtor_refined 0.314 r_nbd_refined 0.232 r_symmetry_hbond_refined 0.155 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1681 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling