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The crystal structure of macrolide glycosyltransferases: A blueprint for antibiotic engineering
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 20-23% PEG8K,0.2M MGCL2,0.1M TRIS-HCL PH 8.5
Crystal Properties Matthews coefficient Solvent content 2.16 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.718 α = 90 b = 65.778 β = 100.42 c = 91.94 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD ADSC CCD 2006-02-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 99.8 0.08 16.06 3.4 94042 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 99.2 0.41 2.82 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 29.88 89255 4762 99.7 0.201 0.2 0.1999 0.232 0.2294 RANDOM 19.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.02 0.13 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.751 r_dihedral_angle_4_deg 19.012 r_dihedral_angle_3_deg 13.614 r_dihedral_angle_1_deg 5.521 r_scangle_it 3.334 r_scbond_it 2.154 r_angle_refined_deg 1.513 r_mcangle_it 1.394 r_mcbond_it 0.888 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.751 r_dihedral_angle_4_deg 19.012 r_dihedral_angle_3_deg 13.614 r_dihedral_angle_1_deg 5.521 r_scangle_it 3.334 r_scbond_it 2.154 r_angle_refined_deg 1.513 r_mcangle_it 1.394 r_mcbond_it 0.888 r_nbtor_refined 0.306 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.187 r_symmetry_vdw_refined 0.178 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5901 Nucleic Acid Atoms Solvent Atoms 604 Heterogen Atoms 153
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing