2IXC

RmlC M. tuberculosis with dTDP-rhamnose

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1				23% (w/v) polyethylene glycol (PEG) 8000, 0.2 M calcium acetate hydrate, 0.1 M sodium cacodylate (pH 5.8)

Crystal Properties
Matthews coefficient	Solvent content
2.14	42.1

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 44.778	α = 89.9
b = 56.845	β = 78.28
c = 90.7	γ = 82.33

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC CCD			M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SRS BEAMLINE PX14.1		SRS	PX14.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	36	93	0.06	7.5	2.2		84823

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.9	89		0.3	1.8	2.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.79	36.2	71906	3784	92.6	0.154	0.151	0.196	RANDOM	25.84

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.18	0.09	-0.01	0.09	0.04	0.07

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.436
r_dihedral_angle_4_deg	16.951
r_dihedral_angle_3_deg	12.295
r_dihedral_angle_1_deg	5.713
r_sphericity_free	3.814
r_scangle_it	2.644
r_scbond_it	1.828
r_sphericity_bonded	1.757
r_angle_refined_deg	1.339
r_rigid_bond_restr	1.187
r_mcangle_it	1.186
r_mcbond_it	0.864
r_nbtor_refined	0.303
r_symmetry_vdw_refined	0.235
r_nbd_refined	0.209
r_symmetry_hbond_refined	0.169
r_xyhbond_nbd_refined	0.156
r_chiral_restr	0.092
r_bond_refined_d	0.012
r_gen_planes_refined	0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6172
Nucleic Acid Atoms
Solvent Atoms	1162
Heterogen Atoms	140

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling