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Structure of the monomeric outer membrane porin OmpG in the open and closed conformation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 100 MM NA-CITRATE PH 5.6 150 MM NACL 12% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.4 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.38 α = 90 b = 71.14 β = 90 c = 191.61 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 20 92.7 0.1 9.9 5.3 188983 1.75
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.7 19.87 25487 1342 100 0.248 0.245 0.301 RANDOM 48.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.2 -2.04 4.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.515 r_dihedral_angle_3_deg 19.389 r_dihedral_angle_4_deg 18.537 r_dihedral_angle_1_deg 11.893 r_scangle_it 4.455 r_mcangle_it 3.718 r_scbond_it 3.384 r_mcbond_it 2.896 r_angle_refined_deg 1.836 r_angle_other_deg 0.956
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.515 r_dihedral_angle_3_deg 19.389 r_dihedral_angle_4_deg 18.537 r_dihedral_angle_1_deg 11.893 r_scangle_it 4.455 r_mcangle_it 3.718 r_scbond_it 3.384 r_mcbond_it 2.896 r_angle_refined_deg 1.836 r_angle_other_deg 0.956 r_symmetry_hbond_refined 0.271 r_nbd_refined 0.236 r_symmetry_vdw_other 0.22 r_nbd_other 0.218 r_nbtor_refined 0.212 r_xyhbond_nbd_refined 0.185 r_symmetry_vdw_refined 0.157 r_nbtor_other 0.101 r_chiral_restr 0.098 r_bond_refined_d 0.016 r_bond_other_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4596 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 304
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling