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Crystal structure of Fumarase of FUM-1 (NP_069927.1) from Archaeoglobus Fulgidus at 1.66 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 7.8 277 0.2M Li Acetate, 20.0% PEG-3350, No Buffer, pH 7.8, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.4 48.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.664 α = 90 b = 51.664 β = 90 c = 157.756 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-09-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.00000, 0.97966, 0.97950 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 21.152 97.8 0.088 0.088 5.1 6.3 25660 19.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.75 86.2 0.664 0.664 1 4 3134
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.66 21.152 25585 1256 97.54 0.175 0.174 0.179 0.197 0.2013 RANDOM 16.333
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 0.72 -1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.554 r_dihedral_angle_4_deg 13.826 r_dihedral_angle_3_deg 12.611 r_scangle_it 6.889 r_dihedral_angle_1_deg 6.332 r_scbond_it 4.953 r_mcangle_it 2.835 r_mcbond_it 2.226 r_angle_refined_deg 1.501 r_angle_other_deg 0.941
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.554 r_dihedral_angle_4_deg 13.826 r_dihedral_angle_3_deg 12.611 r_scangle_it 6.889 r_dihedral_angle_1_deg 6.332 r_scbond_it 4.953 r_mcangle_it 2.835 r_mcbond_it 2.226 r_angle_refined_deg 1.501 r_angle_other_deg 0.941 r_mcbond_other 0.505 r_nbd_refined 0.204 r_nbd_other 0.197 r_symmetry_vdw_other 0.188 r_nbtor_refined 0.179 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.096 r_chiral_restr 0.091 r_nbtor_other 0.088 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1399 Nucleic Acid Atoms Solvent Atoms 182 Heterogen Atoms
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing autoSHARP phasing