2IRN | pdb_00002irn

The NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY0.75 mM RNA duplex, 80 mM NaCl, 0.5 mM Na2EDTA, 10 mM sodium phosphate, pH 5.5, 90% H2O, 10%D2O90% H2O/10% D2O5.5283
2DQF-COSY0.75 mM RNA duplex, 80 mM NaCl, 0.5 mM Na2EDTA, 10 mM sodium phosphate, pH 5.5, 90% H2O, 10%D2O90% H2O/10% D2O5.5283
3NATURAL ABUNDANCE 13C-1H AND 15N-1H HSQC0.75 mM RNA duplex, 80 mM NaCl, 0.5 mM Na2EDTA, 10 mM sodium phosphate, pH 5.5, 90% H2O, 10%D2O90% H2O/10% D2O5.5283
431P-1H HETCOR0.75 mM RNA duplex, 80 mM NaCl, 0.5 mM Na2EDTA, 10 mM sodium phosphate, pH 5.5, 90% H2O, 10%D2O90% H2O/10% D2O5.5283
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealing and restrained molecular dynamicsCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number30
Conformers Submitted Total Number15
Representative Model1 (lowest energy)
Additional NMR Experimental Information
Detailsnatural abundance 13C-1H HSQC, 15N-1H HSQC
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCNS1.1Brunger et al.
2processingNMRPipeDelaglio et al.
3data analysisSparky3Goddard et al.
4refinementCNS1.1Brunger et al.