☰ Navigation Tabs
Clostridium botulinum Neurotoxin Serotype A Light Chain, Residues 1-424
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 10-15% PEG 2000 MMe, 0.3M (NH4)2HPO4, 0.05M TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.32 47.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.55 α = 90 b = 67.67 β = 105.09 c = 98.37 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B 1.0720 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 96.4 0.119 9.2 2.9 61003
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 76.5 0.423 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 50 57400 3078 96.2 0.19769 0.19595 0.209 0.23045 0.2403 RANDOM 25.509
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -1.11 -0.81 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.07 r_dihedral_angle_4_deg 15.369 r_dihedral_angle_3_deg 12.971 r_dihedral_angle_1_deg 8.01 r_scangle_it 1.748 r_angle_refined_deg 1.17 r_scbond_it 1.129 r_mcangle_it 1.111 r_angle_other_deg 0.907 r_mcbond_it 0.646
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.07 r_dihedral_angle_4_deg 15.369 r_dihedral_angle_3_deg 12.971 r_dihedral_angle_1_deg 8.01 r_scangle_it 1.748 r_angle_refined_deg 1.17 r_scbond_it 1.129 r_mcangle_it 1.111 r_angle_other_deg 0.907 r_mcbond_it 0.646 r_nbd_refined 0.198 r_nbd_other 0.18 r_symmetry_vdw_other 0.179 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.136 r_symmetry_vdw_refined 0.12 r_symmetry_hbond_refined 0.116 r_chiral_restr 0.112 r_mcbond_other 0.085 r_metal_ion_refined 0.083 r_nbtor_other 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6506 Nucleic Acid Atoms Solvent Atoms 426 Heterogen Atoms 2
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection MOLREP phasing