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Clostridium botulinum Neurotoxin Serotype A Light Chain Inhibited by 2,4-dichlorocinnamic hydroxamate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 10-15% PEG 2000 MMe, 0.3M (NH4)2HPO4, 0.05M TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.29 46.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.445 α = 90 b = 67.257 β = 106.53 c = 98.194 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B 1.0000 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 50 93.7 0.074 10.5 2.5 63852 63852
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.94 2.01 96.3 0.578 2.1 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.94 50 63821 60589 3232 93.65 0.19102 0.1886 0.2317 0.23695 0.2722 RANDOM 29.451
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.38 -0.9 0.72 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.656 r_dihedral_angle_4_deg 15.271 r_dihedral_angle_3_deg 14.072 r_dihedral_angle_1_deg 9.22 r_scangle_it 2.617 r_scbond_it 1.896 r_angle_refined_deg 1.456 r_mcangle_it 1.158 r_mcbond_it 0.988 r_angle_other_deg 0.888
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.656 r_dihedral_angle_4_deg 15.271 r_dihedral_angle_3_deg 14.072 r_dihedral_angle_1_deg 9.22 r_scangle_it 2.617 r_scbond_it 1.896 r_angle_refined_deg 1.456 r_mcangle_it 1.158 r_mcbond_it 0.988 r_angle_other_deg 0.888 r_symmetry_hbond_refined 0.312 r_symmetry_vdw_refined 0.263 r_nbd_refined 0.21 r_mcbond_other 0.197 r_nbd_other 0.194 r_nbtor_refined 0.187 r_symmetry_vdw_other 0.17 r_xyhbond_nbd_refined 0.157 r_metal_ion_refined 0.092 r_chiral_restr 0.089 r_nbtor_other 0.088 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6516 Nucleic Acid Atoms Solvent Atoms 464 Heterogen Atoms 30
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection