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Crystal structure of protein LPG0564 from Legionella pneumophila str. Philadelphia 1, Pfam DUF1460
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 294 3600mM sodium formate, pH 7, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.92 35.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.892 α = 90 b = 71.052 β = 90 c = 83.904 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2006-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97958 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 20 89.8 0.063 0.063 19.3 6.2 34781 31234 17.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.76 45 0.265 0.265 2.6 2.1 4942
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.67 20 32931 29661 1566 90.07 0.17344 0.17151 0.1729 0.21156 0.2108 RANDOM 21.288
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.69 -1.09 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.007 r_dihedral_angle_4_deg 17.778 r_dihedral_angle_3_deg 12.698 r_dihedral_angle_1_deg 5.333 r_scangle_it 3.321 r_scbond_it 2.194 r_mcangle_it 1.356 r_angle_refined_deg 1.208 r_mcbond_it 0.828 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.007 r_dihedral_angle_4_deg 17.778 r_dihedral_angle_3_deg 12.698 r_dihedral_angle_1_deg 5.333 r_scangle_it 3.321 r_scbond_it 2.194 r_mcangle_it 1.356 r_angle_refined_deg 1.208 r_mcbond_it 0.828 r_nbtor_refined 0.311 r_symmetry_hbond_refined 0.251 r_symmetry_vdw_refined 0.203 r_xyhbond_nbd_refined 0.2 r_nbd_refined 0.199 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2430 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling SHELXS phasing