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Crystal Structure of Focal Adhesion Kinase Domain with 2 molecules in the Asymmetric Unit Complexed with ADP and ATP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JBA PDB ENTRY 1JBA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 278 30% (v/v) PEG-600, 10% glycerol, 0.1M HEPES pH 7.5, 0.05M Li2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.32 46.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.432 α = 99.81 b = 51.645 β = 103.55 c = 66.544 γ = 90.69
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 4 CURVED SI (111) 2003-01-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.187 34.3 95.1 0.045 0.056 16.3 4.8 29887 28426 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.187 2.27 70.9 0.327 0.283 4.1 4.5 2144
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1JBA 2.187 34.3 26989 26989 1436 100 0.21051 0.2073 0.27149 RANDOM 34.932
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.11 -0.44 0.21 -1.91 -1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.083 r_dihedral_angle_4_deg 19.341 r_dihedral_angle_3_deg 17.284 r_dihedral_angle_1_deg 6.175 r_scangle_it 2.618 r_scbond_it 1.63 r_angle_refined_deg 1.365 r_mcangle_it 1.224 r_mcbond_it 0.733 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.083 r_dihedral_angle_4_deg 19.341 r_dihedral_angle_3_deg 17.284 r_dihedral_angle_1_deg 6.175 r_scangle_it 2.618 r_scbond_it 1.63 r_angle_refined_deg 1.365 r_mcangle_it 1.224 r_mcbond_it 0.733 r_nbtor_refined 0.306 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.178 r_symmetry_hbond_refined 0.169 r_symmetry_vdw_refined 0.166 r_chiral_restr 0.092 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4203 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 58
Software Software Software Name Purpose ADSC data collection AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling