2IJC

Structure of a Conserved Protein of Unknown Function PA0269 from Pseudomonas aeruginosa


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.5298pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.2645.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 183.507α = 90
b = 76.719β = 119.3
c = 109.011γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray150CCDSBC-22005-03-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97945APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.055092.221183801770912
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.052.182.46

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.0534.59277091407697.220.2340.193460.190240.2534RANDOM31.409
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.67-0.14-1.89-1.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.991
r_dihedral_angle_4_deg19.079
r_dihedral_angle_3_deg17.956
r_dihedral_angle_1_deg12.569
r_scangle_it3.42
r_scbond_it2.287
r_angle_refined_deg1.831
r_mcangle_it1.415
r_mcbond_it0.878
r_symmetry_hbond_refined0.382
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.991
r_dihedral_angle_4_deg19.079
r_dihedral_angle_3_deg17.956
r_dihedral_angle_1_deg12.569
r_scangle_it3.42
r_scbond_it2.287
r_angle_refined_deg1.831
r_mcangle_it1.415
r_mcbond_it0.878
r_symmetry_hbond_refined0.382
r_nbtor_refined0.301
r_symmetry_vdw_refined0.291
r_nbd_refined0.238
r_xyhbond_nbd_refined0.213
r_chiral_restr0.175
r_bond_refined_d0.015
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10054
Nucleic Acid Atoms
Solvent Atoms833
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
HKL-3000phasing
SHELXEmodel building
SOLVEphasing
RESOLVEphasing
ARP/wARPmodel building