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Structure of the A264H mutant of cytochrome P450 BM3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IJ2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 PEG and Magnesium sulphate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.62 52.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.703 α = 90 b = 155.173 β = 94.19 c = 62.198 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 98.9 0.071 11.1 81622 81622
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2IJ2 1.9 19.98 81622 81622 4304 98.9 0.17887 0.17887 0.17685 0.21821 0.2411 RANDOM 30.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.635 r_dihedral_angle_3_deg 13.502 r_dihedral_angle_4_deg 13.451 r_dihedral_angle_1_deg 5.444 r_scangle_it 2.691 r_scbond_it 1.714 r_angle_refined_deg 1.124 r_mcangle_it 1.08 r_mcbond_it 0.965 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.635 r_dihedral_angle_3_deg 13.502 r_dihedral_angle_4_deg 13.451 r_dihedral_angle_1_deg 5.444 r_scangle_it 2.691 r_scbond_it 1.714 r_angle_refined_deg 1.124 r_mcangle_it 1.08 r_mcbond_it 0.965 r_nbtor_refined 0.3 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.141 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7373 Nucleic Acid Atoms Solvent Atoms 852 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling AMoRE phasing