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Crystal Structure of Alpha-11 Giardin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 200mM Lithium Sulfate, 100mM MES pH 6.0, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.4 48.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.951 α = 90 b = 60.954 β = 90 c = 119.909 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 2006-07-04 M MAD 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.979,0.905 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 42.74 97.2 0.121 6.4 9.01 133460
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.1 1.14 94.2 0.482 2 5.98 12772
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.1 42.74 133369 6722 97.25 0.196 0.195 0.1932 0.225 0.2237 RANDOM 13.814
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.516 r_dihedral_angle_4_deg 16.815 r_dihedral_angle_3_deg 11.198 r_dihedral_angle_1_deg 5.292 r_sphericity_free 4.605 r_sphericity_bonded 3.59 r_scangle_it 3.426 r_scbond_it 2.506 r_mcangle_it 1.786 r_rigid_bond_restr 1.525
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.516 r_dihedral_angle_4_deg 16.815 r_dihedral_angle_3_deg 11.198 r_dihedral_angle_1_deg 5.292 r_sphericity_free 4.605 r_sphericity_bonded 3.59 r_scangle_it 3.426 r_scbond_it 2.506 r_mcangle_it 1.786 r_rigid_bond_restr 1.525 r_mcbond_it 1.291 r_angle_refined_deg 1.256 r_nbtor_refined 0.309 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.156 r_symmetry_hbond_refined 0.156 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2515 Nucleic Acid Atoms Solvent Atoms 625 Heterogen Atoms 10
Software Software Software Name Purpose d*TREK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction