X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6277200mM Lithium Sulfate, 100mM MES pH 6.0, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.448.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.951α = 90
b = 60.954β = 90
c = 119.909γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 3152006-07-04MMAD
21
31
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-10.979,0.905SSRLBL9-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.142.7497.20.1216.49.01133460
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.11.1494.20.48225.9812772

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.142.74133369672297.250.1960.1950.225RANDOM13.814
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.08-0.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.516
r_dihedral_angle_4_deg16.815
r_dihedral_angle_3_deg11.198
r_dihedral_angle_1_deg5.292
r_sphericity_free4.605
r_sphericity_bonded3.59
r_scangle_it3.426
r_scbond_it2.506
r_mcangle_it1.786
r_rigid_bond_restr1.525
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.516
r_dihedral_angle_4_deg16.815
r_dihedral_angle_3_deg11.198
r_dihedral_angle_1_deg5.292
r_sphericity_free4.605
r_sphericity_bonded3.59
r_scangle_it3.426
r_scbond_it2.506
r_mcangle_it1.786
r_rigid_bond_restr1.525
r_mcbond_it1.291
r_angle_refined_deg1.256
r_nbtor_refined0.309
r_nbd_refined0.201
r_symmetry_vdw_refined0.156
r_symmetry_hbond_refined0.156
r_xyhbond_nbd_refined0.13
r_chiral_restr0.083
r_bond_refined_d0.01
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2515
Nucleic Acid Atoms
Solvent Atoms625
Heterogen Atoms10

Software

Software
Software NamePurpose
d*TREKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ADSCdata collection
HKL-2000data reduction