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Crystal structure of a nimc/nima family protein (ca_c2569) from clostridium acetobutylicum at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 7 277 3.2M (NH4)2SO4, 0.1M HEPES, pH 7.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.53 50.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.431 α = 90 b = 65.305 β = 90 c = 108.788 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Flat mirror (vertical focusing) 2006-07-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.918370, 0.979251, 0.978981 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 26.861 96.4 0.051 0.051 8.9 3.5 33939
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 96.5 0.408 0.408 1.9 3.6 2473
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 26.861 33899 1706 95.88 0.17 0.168 0.1803 0.198 0.2067 RANDOM 34.268
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.1 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.964 r_dihedral_angle_4_deg 17.641 r_dihedral_angle_3_deg 11.711 r_dihedral_angle_1_deg 6.076 r_scangle_it 5.056 r_scbond_it 3.927 r_mcangle_it 2.674 r_mcbond_it 2.037 r_angle_refined_deg 1.394 r_angle_other_deg 0.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.964 r_dihedral_angle_4_deg 17.641 r_dihedral_angle_3_deg 11.711 r_dihedral_angle_1_deg 6.076 r_scangle_it 5.056 r_scbond_it 3.927 r_mcangle_it 2.674 r_mcbond_it 2.037 r_angle_refined_deg 1.394 r_angle_other_deg 0.782 r_mcbond_other 0.452 r_nbd_refined 0.221 r_symmetry_vdw_other 0.2 r_nbd_other 0.193 r_nbtor_refined 0.185 r_symmetry_hbond_refined 0.164 r_xyhbond_nbd_refined 0.152 r_symmetry_vdw_refined 0.125 r_chiral_restr 0.091 r_nbtor_other 0.089 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2251 Nucleic Acid Atoms Solvent Atoms 275 Heterogen Atoms 59
Software Software Software Name Purpose MolProbity model building SHARP phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling