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Crystal structure of rabbit muscle glycogen phosphorylase in complex with 3,4-dihydro-2-quinolone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.7 298 10mM BES, 0.1mM EDTA, pH 6.7, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.38 48.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.402 α = 90 b = 125.344 β = 90 c = 129.309 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Rh coated Si mirror 2002-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 33 80.52 2.5 109793 109793 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 33 109793 5805 80.52 0.25743 0.25533 0.2676 0.29742 0.3082 RANDOM 32.185
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.12 0.96 1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.671 r_dihedral_angle_4_deg 20.501 r_dihedral_angle_3_deg 16.823 r_dihedral_angle_1_deg 5.277 r_scangle_it 1.429 r_angle_refined_deg 1.349 r_scbond_it 0.932 r_mcangle_it 0.678 r_mcbond_it 0.399 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.671 r_dihedral_angle_4_deg 20.501 r_dihedral_angle_3_deg 16.823 r_dihedral_angle_1_deg 5.277 r_scangle_it 1.429 r_angle_refined_deg 1.349 r_scbond_it 0.932 r_mcangle_it 0.678 r_mcbond_it 0.399 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.193 r_xyhbond_nbd_refined 0.149 r_symmetry_hbond_refined 0.133 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12829 Nucleic Acid Atoms Solvent Atoms 617 Heterogen Atoms 90
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction CCP4 data scaling AMoRE phasing