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Crystal structure of rabbit muscle glycogen phosphorylase in complex with 3,4-dihydro-2-quinolone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.7 298 10mM BES, pH6.7, 0.1mM EDTA, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.36 47.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.12 α = 90 b = 125.156 β = 90 c = 128.387 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Rh coated Si mirror 2002-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 32.97 81.29 3.2 111798 111798 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 32.97 1 1 111798 111798 5893 81.29 0.23028 0.22824 0.2358 0.26931 0.2716 RANDOM 35.128
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.01 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.426 r_scangle_it 2.372 r_angle_refined_deg 1.486 r_scbond_it 1.469 r_mcangle_it 0.976 r_angle_other_deg 0.865 r_mcbond_it 0.548 r_symmetry_hbond_refined 0.319 r_symmetry_vdw_refined 0.286 r_symmetry_vdw_other 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.426 r_scangle_it 2.372 r_angle_refined_deg 1.486 r_scbond_it 1.469 r_mcangle_it 0.976 r_angle_other_deg 0.865 r_mcbond_it 0.548 r_symmetry_hbond_refined 0.319 r_symmetry_vdw_refined 0.286 r_symmetry_vdw_other 0.26 r_nbd_other 0.25 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.174 r_nbtor_other 0.087 r_chiral_restr 0.076 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13100 Nucleic Acid Atoms Solvent Atoms 743 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction CCP4 data scaling AMoRE phasing