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Annexin V under 2.0 MPa pressure of nitrous oxide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A8A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 annexin V 10mg/ml, Tris HCL 20mM, PH 8, NACL 235MM, (NH4)SO4 1.76M, CACL2 12MM, HEPES 100MM, NAN3 3MM, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.48 50.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.028 α = 90 b = 157.028 β = 90 c = 37.327 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 IMAGE PLATE MAR scanner 345 mm plate mirrors 2003-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 0.964 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 99 97.3 0.045 29.2 34281 1 24.39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.74 1.8 83.2 0.178 2953
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1A8A 1.75 14.84 34235 1728 99.05 0.175 0.174 0.1732 0.203 0.2015 RANDOM 29.753
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.44 r_dihedral_angle_4_deg 19.208 r_dihedral_angle_3_deg 15.79 r_dihedral_angle_1_deg 4.98 r_scangle_it 4.753 r_scbond_it 2.995 r_mcangle_it 1.726 r_angle_refined_deg 1.471 r_mcbond_it 1.007 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.44 r_dihedral_angle_4_deg 19.208 r_dihedral_angle_3_deg 15.79 r_dihedral_angle_1_deg 4.98 r_scangle_it 4.753 r_scbond_it 2.995 r_mcangle_it 1.726 r_angle_refined_deg 1.471 r_mcbond_it 1.007 r_nbtor_refined 0.311 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.165 r_metal_ion_refined 0.145 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.103 r_symmetry_hbond_refined 0.078 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2524 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 33
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection