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Crystal structure of human RAC3 grown in the presence of Gpp(NH)p.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2G0N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 293 0.1 M BIS-TRIS, 20% MPEG 5K , pH 6.5, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.31 46.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.755 α = 90 b = 81.583 β = 90 c = 84.381 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99980 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 45.31 98.8 4.5 29632 29632
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 92.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2G0N 1.9 45.31 28080 28080 1501 98.82 0.15505 0.15264 0.20026 0.2187 RANDOM 24.712
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 1.28 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.304 r_dihedral_angle_4_deg 18.273 r_dihedral_angle_3_deg 11.586 r_scangle_it 8.427 r_scbond_it 6.757 r_dihedral_angle_1_deg 5.3 r_mcangle_it 4.592 r_mcbond_it 3.688 r_angle_refined_deg 1.469 r_mcbond_other 1.362
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.304 r_dihedral_angle_4_deg 18.273 r_dihedral_angle_3_deg 11.586 r_scangle_it 8.427 r_scbond_it 6.757 r_dihedral_angle_1_deg 5.3 r_mcangle_it 4.592 r_mcbond_it 3.688 r_angle_refined_deg 1.469 r_mcbond_other 1.362 r_angle_other_deg 0.935 r_symmetry_vdw_other 0.239 r_symmetry_hbond_refined 0.211 r_nbd_refined 0.203 r_nbd_other 0.198 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.138 r_symmetry_vdw_refined 0.136 r_chiral_restr 0.085 r_nbtor_other 0.085 r_metal_ion_refined 0.046 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2725 Nucleic Acid Atoms Solvent Atoms 278 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling