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Crystal structure of the C-terminal domain of Ebola virus VP30
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1M ammonium acetate, 15mM magnesium acetate tetrahydrate, 0.05M sodium cacodylate, 10%(v/v) isopropanol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.13 42.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.37 α = 90 b = 63.59 β = 90 c = 80.43 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 225 mm toroidal mirror 2005-05-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97630, 0.97950 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 99.7 0.076 17.6 4.8 20848 20788 -3 30.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99.9 0.289 5.7 4.8 2793
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 25 20788 20788 1101 99.79 0.19736 0.19736 0.19504 0.2027 0.24055 RANDOM 28.549
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.98 -3.03 5.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.937 r_dihedral_angle_4_deg 16.447 r_dihedral_angle_3_deg 15.302 r_dihedral_angle_1_deg 4.216 r_scangle_it 3.113 r_scbond_it 1.902 r_mcangle_it 1.263 r_angle_refined_deg 1.141 r_mcbond_it 0.735 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.937 r_dihedral_angle_4_deg 16.447 r_dihedral_angle_3_deg 15.302 r_dihedral_angle_1_deg 4.216 r_scangle_it 3.113 r_scbond_it 1.902 r_mcangle_it 1.263 r_angle_refined_deg 1.141 r_mcbond_it 0.735 r_nbtor_refined 0.294 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.157 r_symmetry_vdw_refined 0.146 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2054 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ProDC data collection XDS data reduction XSCALE data scaling CCP4 data scaling SnB phasing