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Abl kinase domain in complex with PD180970
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.9 M NaAcetate, 0.1 M NaCacodylate pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.08 60.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.475 α = 90 b = 131.533 β = 90 c = 56.459 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2001-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 82.758 99.5 0.07 0.07 8.3 4.8 87524
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.79 100 0.424 0.424 1.7 4.9 12666
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.7 81.65 83093 4365 0.17692 0.1755 0.20431 0.2052 RANDOM 21.206
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 0.15 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.586 r_dihedral_angle_1_deg 4.882 r_scangle_it 4.464 r_scbond_it 2.823 r_mcangle_it 1.785 r_angle_refined_deg 1.685 r_angle_other_deg 1.374 r_mcbond_it 0.985 r_symmetry_vdw_refined 0.281 r_nbd_refined 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.586 r_dihedral_angle_1_deg 4.882 r_scangle_it 4.464 r_scbond_it 2.823 r_mcangle_it 1.785 r_angle_refined_deg 1.685 r_angle_other_deg 1.374 r_mcbond_it 0.985 r_symmetry_vdw_refined 0.281 r_nbd_refined 0.23 r_symmetry_hbond_refined 0.204 r_nbd_other 0.197 r_symmetry_vdw_other 0.195 r_xyhbond_nbd_other 0.166 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.1 r_nbtor_other 0.097 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4327 Nucleic Acid Atoms Solvent Atoms 540 Heterogen Atoms 58
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling