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Crystal structure of the benzylamine complex of aromatic amine dehydrogenase in N-semiquinone form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 295 PEG 2000 MME, Ammonium Sulphate, Sodium Cacodylate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.41 49.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.792 α = 90 b = 88.593 β = 90.3 c = 79.989 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 45.596 99.7 0.061 0.061 8 3.6 173851
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.53 100 0.35 0.35 2.1 3.6 25420
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.45 15 173821 173821 8689 99.75 0.148 0.147 0.1478 0.172 0.1716 RANDOM 13.394
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 -0.46 -0.23 0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.348 r_dihedral_angle_4_deg 12.073 r_dihedral_angle_3_deg 11.09 r_dihedral_angle_1_deg 7.29 r_scangle_it 5.185 r_scbond_it 4.015 r_mcangle_it 2.487 r_mcbond_it 2.097 r_angle_refined_deg 1.282 r_angle_other_deg 0.744
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.348 r_dihedral_angle_4_deg 12.073 r_dihedral_angle_3_deg 11.09 r_dihedral_angle_1_deg 7.29 r_scangle_it 5.185 r_scbond_it 4.015 r_mcangle_it 2.487 r_mcbond_it 2.097 r_angle_refined_deg 1.282 r_angle_other_deg 0.744 r_mcbond_other 0.596 r_symmetry_vdw_refined 0.26 r_symmetry_vdw_other 0.24 r_nbd_refined 0.217 r_nbd_other 0.201 r_nbtor_refined 0.18 r_symmetry_hbond_refined 0.161 r_xyhbond_nbd_refined 0.155 r_nbtor_other 0.102 r_chiral_restr 0.083 r_bond_refined_d 0.012 r_xyhbond_nbd_other 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7280 Nucleic Acid Atoms Solvent Atoms 1184 Heterogen Atoms 24
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling