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Solution Structure of CSFV IRES Domain IIa
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 1.5mM CSFV IRES domain IIa RNA U-15N,13C, 10mM phosphate buffer, 50mM sodium chloride 100% D2O 50mM sodium chloride 6.0 ambient 298 2 3D HMQC TOCSY 1.5mM CSFV IRES domain IIa RNA U-15N,13C, 10mM phosphate buffer, 50mM sodium chloride 100% D2O 50mM sodium chloride 6.0 ambient 298 3 3D HCP 1.5mM CSFV IRES domain IIa RNA U-15N,13C, 10mM phosphate buffer, 50mM sodium chloride 100% D2O 50mM sodium chloride 6.0 ambient 298 4 2D HP-COSY 1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride 100% D2O 50mM sodium chloride 6.0 ambient 298 5 2D DQF-COSY 1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride 100% D2O 50mM sodium chloride 6.0 ambient 298 6 2D NOESY 1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride 100% D2O 50mM sodium chloride 6.0 ambient 298 7 2D HP-COSY 1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride 100% D2O 50mM sodium chloride 6.0 ambient 288 8 2D DQF-COSY 1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride 100% D2O 50mM sodium chloride 6.0 ambient 288 9 2D NOESY 1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride 100% D2O 50mM sodium chloride 6.0 ambient 288 10 2D S-NOESY 1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride 96% H2O, 4% D2O 50mM sodium chloride 6.0 ambient 288 11 2D S-NOESY 1.5mM CSFV IRES domain IIa RNA, 10mM phosphate buffer, 50mM sodium chloride 96% H2O, 4% D2O 50mM sodium chloride 6.0 ambient 278
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800 2 Bruker DMX 600
NMR Ensemble Information Conformer Selection Criteria lowest restraint violation and total energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 11 Representative Model 1 (lowest energy)
Additional NMR Experimental Information Details The structure was solved using triple resonance, multidimensional NMR spectroscopy and TROSY-type experiments to measure residual dipolar couplings
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR XPLOR-NIH Schwieters, Kuszewski, Tjandra, Clore 2 processing XwinNMR 3.1 Bruker 3 data analysis Sparky 3 Goddard, Kneller 4 refinement PALES 1 Zweckstetter, Bax