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Binding of inhibitors by Acylaminoacyl peptidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 20mM Tris/HCl, 20% ethanol, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.26 45.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.81 α = 90 b = 103.922 β = 90 c = 169.255 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IIC 2005-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 19.96 99.1 0.137 11.68 45009 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.5 99.9 0.38 4.46 5151
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 19.96 42954 42954 2264 99.56 0.21778 0.21778 0.2155 0.26128 0.2539 RANDOM (as for related pdb entry 2HU5) 5.952
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.17 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.791 r_angle_other_deg 0.887 r_angle_refined_deg 0.878 r_scangle_it 0.414 r_scbond_it 0.264 r_symmetry_vdw_refined 0.256 r_symmetry_hbond_refined 0.251 r_nbd_other 0.242 r_symmetry_vdw_other 0.231 r_xyhbond_nbd_refined 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.791 r_angle_other_deg 0.887 r_angle_refined_deg 0.878 r_scangle_it 0.414 r_scbond_it 0.264 r_symmetry_vdw_refined 0.256 r_symmetry_hbond_refined 0.251 r_nbd_other 0.242 r_symmetry_vdw_other 0.231 r_xyhbond_nbd_refined 0.195 r_nbd_refined 0.185 r_mcangle_it 0.109 r_nbtor_other 0.084 r_mcbond_it 0.061 r_chiral_restr 0.055 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8584 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing