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N1 neuraminidase in complex with oseltamivir 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 MES, PEG3350, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.29 62.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 198.083 α = 90 b = 200.576 β = 90 c = 210.417 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2006-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 30 79.4 88347 70678
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.95 142.86 88347 70636 3705 79.11 0.22136 0.21754 0.2566 0.2953 0.2573 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.219 r_dihedral_angle_3_deg 21.311 r_dihedral_angle_4_deg 17.74 r_dihedral_angle_1_deg 9.743 r_scangle_it 3.307 r_angle_refined_deg 2.283 r_scbond_it 2.073 r_mcangle_it 1.459 r_mcbond_it 0.852 r_symmetry_hbond_refined 0.369
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.219 r_dihedral_angle_3_deg 21.311 r_dihedral_angle_4_deg 17.74 r_dihedral_angle_1_deg 9.743 r_scangle_it 3.307 r_angle_refined_deg 2.283 r_scbond_it 2.073 r_mcangle_it 1.459 r_mcbond_it 0.852 r_symmetry_hbond_refined 0.369 r_nbtor_refined 0.325 r_symmetry_vdw_refined 0.314 r_nbd_refined 0.293 r_xyhbond_nbd_refined 0.214 r_chiral_restr 0.156 r_bond_refined_d 0.023 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23696 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection CrystalClear data reduction CrystalClear data scaling AMoRE phasing