2HTI

CRYSTAL STRUCTURE OF A FLAVIN-NUCLEOTIDE-BINDING PROTEIN (BH_0577) FROM BACILLUS HALODURANS AT 2.50 A RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
129322.0% PEG-3350, 0.15M NaThioCyanate, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.4363.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.17α = 90
b = 72.17β = 90
c = 129.981γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat collimating mirror, toroid focusing mirror2006-06-05MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.92522,0.97934SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.328.83199.70.0980.0985.213.67389
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.422.4899.70.0150.015070.514.4586

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.528.831738934699.420.210.2080.262RANDOM57.979
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.550.781.55-2.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.433
r_dihedral_angle_3_deg14.91
r_dihedral_angle_4_deg12.38
r_dihedral_angle_1_deg8.53
r_scangle_it7.111
r_scbond_it4.713
r_mcangle_it3.345
r_mcbond_it1.741
r_angle_refined_deg1.547
r_angle_other_deg0.675
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.433
r_dihedral_angle_3_deg14.91
r_dihedral_angle_4_deg12.38
r_dihedral_angle_1_deg8.53
r_scangle_it7.111
r_scbond_it4.713
r_mcangle_it3.345
r_mcbond_it1.741
r_angle_refined_deg1.547
r_angle_other_deg0.675
r_mcbond_other0.237
r_nbd_refined0.225
r_nbd_other0.217
r_xyhbond_nbd_refined0.207
r_nbtor_refined0.205
r_symmetry_vdw_other0.183
r_symmetry_vdw_refined0.155
r_symmetry_hbond_refined0.152
r_nbtor_other0.093
r_chiral_restr0.076
r_bond_refined_d0.012
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms943
Nucleic Acid Atoms
Solvent Atoms20
Heterogen Atoms54

Software

Software
Software NamePurpose
MolProbitymodel building
SHELXphasing
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
MOSFLMdata reduction
CCP4data scaling
SOLVEphasing