X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52910.2M MgCl2, 0.1M Tris, 25% PEG 3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.141.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.032α = 90
b = 120.063β = 99.48
c = 84.743γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152005-04-19MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97926, 0.97943APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.540.4699.4128174128174-3-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5588.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.540.46121745121745642899.440.161610.159960.19311RANDOM16.539
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.230.07-0.240.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.354
r_dihedral_angle_4_deg13.731
r_dihedral_angle_3_deg13.194
r_dihedral_angle_1_deg5.381
r_scangle_it3.791
r_scbond_it2.541
r_mcangle_it1.427
r_angle_refined_deg1.341
r_mcbond_it0.929
r_nbtor_refined0.315
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.354
r_dihedral_angle_4_deg13.731
r_dihedral_angle_3_deg13.194
r_dihedral_angle_1_deg5.381
r_scangle_it3.791
r_scbond_it2.541
r_mcangle_it1.427
r_angle_refined_deg1.341
r_mcbond_it0.929
r_nbtor_refined0.315
r_symmetry_vdw_refined0.221
r_nbd_refined0.203
r_symmetry_hbond_refined0.154
r_xyhbond_nbd_refined0.152
r_chiral_restr0.092
r_symmetry_metal_ion_refined0.021
r_bond_refined_d0.012
r_gen_planes_refined0.007
r_metal_ion_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6843
Nucleic Acid Atoms
Solvent Atoms1266
Heterogen Atoms61

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing
autoSHARPphasing
ARP/wARPmodel building
Cootmodel building