☰ Navigation Tabs
Crystal Structure of Blue Laccase from Trametes trogii
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QT6 Blue Laccase from Panus tigrinus (not yet deposited)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 296 PEG 8000, calcium acetato, PEG 400, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 3.65 66.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.932 α = 90 b = 84.327 β = 90 c = 108.383 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD ONYX CCD 2005-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCED ULTRA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 45.69 92.4 0.133 8 2.8 22722 21268
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 95.5 0.345 3.3 2.8 3352
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Blue Laccase from Panus tigrinus (not yet deposited) 2.6 39.53 22722 20201 1141 90.99 0.216 0.17798 0.1749 0.1846 0.23337 0.2379 RANDOM 32.973
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.22 0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.052 r_dihedral_angle_4_deg 20.129 r_dihedral_angle_3_deg 16.556 r_dihedral_angle_1_deg 7.695 r_scangle_it 2.807 r_angle_refined_deg 1.905 r_scbond_it 1.837 r_mcangle_it 1.236 r_mcbond_it 0.699 r_nbtor_refined 0.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.052 r_dihedral_angle_4_deg 20.129 r_dihedral_angle_3_deg 16.556 r_dihedral_angle_1_deg 7.695 r_scangle_it 2.807 r_angle_refined_deg 1.905 r_scbond_it 1.837 r_mcangle_it 1.236 r_mcbond_it 0.699 r_nbtor_refined 0.323 r_symmetry_hbond_refined 0.283 r_nbd_refined 0.251 r_symmetry_vdw_refined 0.249 r_metal_ion_refined 0.236 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.159 r_bond_refined_d 0.016 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3755 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing