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Conformation of the AcrB Multidrug Efflux Pump in Mutants of the Putative Proton Relay Pathway
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 pH 5.6, vapor diffusion Hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.61 73.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.9 α = 90 b = 144.9 β = 90 c = 518.635 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.38 50 99.1 1102154 2.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.38 3.56 94.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.38 20 27257 1455 96.51 0.25507 0.25406 0.3386 0.27458 0.3501 RANDOM 94.762
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9 -0.45 -0.9 1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.707 r_dihedral_angle_3_deg 29.51 r_dihedral_angle_4_deg 21.57 r_dihedral_angle_1_deg 19.062 r_scangle_it 9.125 r_scbond_it 5.702 r_angle_refined_deg 5.596 r_mcangle_it 3.975 r_mcbond_it 2.155 r_nbd_refined 0.463
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.707 r_dihedral_angle_3_deg 29.51 r_dihedral_angle_4_deg 21.57 r_dihedral_angle_1_deg 19.062 r_scangle_it 9.125 r_scbond_it 5.702 r_angle_refined_deg 5.596 r_mcangle_it 3.975 r_mcbond_it 2.155 r_nbd_refined 0.463 r_symmetry_vdw_refined 0.417 r_nbtor_refined 0.411 r_xyhbond_nbd_refined 0.4 r_symmetry_hbond_refined 0.387 r_chiral_restr 0.348 r_bond_refined_d 0.075 r_gen_planes_refined 0.018 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7719 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling