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Crystal structure of SOCS3 in complex with gp130(pTyr757) phosphopeptide.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2SHP PDB Entry: 2SHP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 297 30% PEG8000, 0.1 M Sodium Cacodylate, 0.2 M Sodium Acetate, VAPOR DIFFUSION, HANGING DROP, temperature 297K, pH 6.50
Crystal Properties Matthews coefficient Solvent content 1.94 36.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.918 α = 90 b = 94.708 β = 90 c = 69.922 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2006-03-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.5 0.56 15.6 3.5 9956
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 99.4 0.323 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry: 2SHP 2 47.35 9442 470 99.5 0.244 0.242 0.2368 0.291 0.2811 RANDOM 28.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 -0.41 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.636 r_dihedral_angle_4_deg 19.421 r_dihedral_angle_3_deg 16.517 r_dihedral_angle_1_deg 5.999 r_scangle_it 2.769 r_scbond_it 1.83 r_mcangle_it 1.619 r_angle_refined_deg 1.384 r_mcbond_it 0.928 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.636 r_dihedral_angle_4_deg 19.421 r_dihedral_angle_3_deg 16.517 r_dihedral_angle_1_deg 5.999 r_scangle_it 2.769 r_scbond_it 1.83 r_mcangle_it 1.619 r_angle_refined_deg 1.384 r_mcbond_it 0.928 r_nbtor_refined 0.306 r_symmetry_hbond_refined 0.22 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.18 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1051 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing