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NMR solution structure of a new tomato peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D TOCSY 1mM tomato peptide; 0.4% of solution H2O/10% HCl; 90% H2O, 10% D2O 90% H2O/10% D2O 4.5 ambient 298 2 2D NOESY 1mM tomato peptide; 0.4% of solution H2O/10% HCl; 90% H2O, 10% D2O 90% H2O/10% D2O 4.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics and energy minimization in explicit solvent CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 2. 1 P. Guntert et. al. 2 structure solution Amber 8.0 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN 3 refinement Amber 8.0 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN