2HI6
Solution NMR structure of UPF0107 protein AF_0055, Northeast Structural Genomics Consortium Target GR101
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | SIMULTANEOUS HETERONUCLEAR RESOLVED [1H,1H]-NOESY | 5-5.5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 10mM DTT, 0.02% NaN3, pH 5.5, 5% D2O, 95% H2O U-15N,13C | 95% H2O/5% D2O | 5.5 | ambient | 298 | ||
2 | GFT (4,3)D HNNCABCA | 5-5.5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 10mM DTT, 0.02% NaN3, pH 5.5, 5% D2O, 95% H2O U-15N,13C | 95% H2O/5% D2O | 5.5 | ambient | 298 | ||
3 | GFT (4,3)D CABCA(CO)NHN | 5-5.5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 10mM DTT, 0.02% NaN3, pH 5.5, 5% D2O, 95% H2O U-15N,13C | 95% H2O/5% D2O | 5.5 | ambient | 298 | ||
4 | GFT (4,3)D HABCAB(CO)NHN | 5-5.5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 10mM DTT, 0.02% NaN3, pH 5.5, 5% D2O, 95% H2O U-15N,13C | 95% H2O/5% D2O | 5.5 | ambient | 298 | ||
5 | GFT (4,3)D HCCH | 5-5.5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 10mM DTT, 0.02% NaN3, pH 5.5, 5% D2O, 95% H2O U-15N,13C | 95% H2O/5% D2O | 5.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 750 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing molecular dynamics torsion angle dynamics | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1c | |
2 | processing | NMRPipe | 2.3 | Delaglio, F |
3 | data analysis | AutoAssign | 1.15.1 | Moseley, H. |
4 | data analysis | AutoStructure | 2.0 | HUANG, Y.J. |
5 | structure solution | CYANA | 2.1 | GUNTERT, P. |
6 | refinement | CNS | 1.1 | Brunger, A.T. |