2HH6 | pdb_00002hh6

Crystal structure of BH3980 (10176605) from BACILLUS HALODURANS at 2.04 A resolution

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION,SITTING DROP,NANODROP	8.5	277	2.0M (NH4)2SO4, 0.1M TRIS pH 8.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K

Crystal Properties
Matthews coefficient	Solvent content
5.26	76.43

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 93.54	α = 90
b = 93.54	β = 90
c = 115.32	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315	1m long Rh coated bent cylindrical mirror forhorizontal and vertical focussing	2006-05-26	M	SINGLE WAVELENGTH
2	1	x-ray	100	CCD	ADSC Q315	Flat mirror (vertical focusing)	2006-04-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL1-5	0.979075	SSRL	BL1-5
2	SYNCHROTRON	SSRL BEAMLINE BL11-1	0.979075	SSRL	BL11-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1,2	2.04	46.984	98.1	0.098	12.24			19622			40.266

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1,2	2.04	2.11	95.3		0.893	2.2		3296

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	2.04	46.984	19577	999	99.98	0.225	0.22491	0.224	0.23	0.238	0.25	RANDOM	30.351

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.297
r_dihedral_angle_4_deg	20.7
r_dihedral_angle_3_deg	14.017
r_scangle_it	6.446
r_scbond_it	5.071
r_dihedral_angle_1_deg	4.79
r_mcangle_it	2.763
r_mcbond_it	2.126
r_angle_refined_deg	1.053
r_angle_other_deg	0.72
r_mcbond_other	0.416
r_symmetry_vdw_refined	0.35
r_nbd_refined	0.21
r_xyhbond_nbd_refined	0.209
r_symmetry_vdw_other	0.2
r_nbtor_refined	0.189
r_nbd_other	0.17
r_nbtor_other	0.087
r_symmetry_hbond_refined	0.07
r_chiral_restr	0.063
r_bond_refined_d	0.016
r_gen_planes_refined	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	888
Nucleic Acid Atoms
Solvent Atoms	78
Heterogen Atoms

Software

Software
Software Name	Purpose
MolProbity	model building
REFMAC	refinement
XSCALE	data scaling
PDB_EXTRACT	data extraction