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Solution NMR Structure of Protein yppE from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR213
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 SIMULTANEOUS HETERONUCLEAR RESOLVED [1H,1H]-NOESY Buffer: MC2023 -- 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O 6.5 ambient 298 2 GFT (4,3)D HNNCABCA Buffer: MC2023 -- 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O 6.5 ambient 298 3 GFT (4,3)D CABCA(CO)NHN Buffer: MC2023 -- 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O 6.5 ambient 298 4 GFT (4,3) HCCH Buffer: MC2023 -- 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O 6.5 ambient 298 5 HNCACB Buffer: MC2023 -- 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O 6.5 ambient 298 6 HABcoNH Buffer: MC2023 -- 50mM Arginine, 10mM DTT, 50mM Bis Tris pH 6.5, 95% H2O, 5% D2O 95% H2O/5% D2O 6.5 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 750 2 Varian INOVA 600 3 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing,
molecular dynamics,
torsion angle dynamics VNMR
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Additional NMR Experimental Information Details The protein start to form dimer at NMR concentration
Computation: NMR Software # Classification Version Software Name Author 1 collection VNMR c VARIAN 2 processing NMRPipe 2.3 Delaglio, F. 3 data analysis XEASY 1.3.1.3 BARTELS, C. 4 structure solution CYANA 2.1 GUNTERT,P. 5 data analysis AutoStructure 2.0 HUANG, Y.J. 6 refinement CNS 1.1 Brunger, A.T.