X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.1303ammonium sulfate 30% w/v, 0.5 M sodium formate, sucrose (1M) 100ml, 40 uL of b-octyl glucosidase (0.50% w/v), pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 303K
Crystal Properties
Matthews coefficientSolvent content
3.4764.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 123.981α = 90
b = 123.981β = 90
c = 219.565γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCD2004-01-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM141.5148ESRFBM14

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25107.211480004666233
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.399

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.32042515226499.740.186990.184810.22835RANDOM35.781
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.480.240.48-0.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.324
r_dihedral_angle_4_deg22.612
r_dihedral_angle_3_deg18.138
r_dihedral_angle_1_deg7.945
r_scangle_it4.319
r_scbond_it3.157
r_angle_refined_deg2.1
r_mcangle_it1.857
r_mcbond_it1.709
r_angle_other_deg1.096
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.324
r_dihedral_angle_4_deg22.612
r_dihedral_angle_3_deg18.138
r_dihedral_angle_1_deg7.945
r_scangle_it4.319
r_scbond_it3.157
r_angle_refined_deg2.1
r_mcangle_it1.857
r_mcbond_it1.709
r_angle_other_deg1.096
r_mcbond_other0.347
r_symmetry_vdw_other0.307
r_symmetry_vdw_refined0.282
r_nbd_refined0.235
r_nbd_other0.232
r_chiral_restr0.196
r_nbtor_refined0.193
r_xyhbond_nbd_refined0.186
r_symmetry_hbond_refined0.158
r_nbtor_other0.103
r_xyhbond_nbd_other0.047
r_bond_refined_d0.029
r_gen_planes_refined0.011
r_bond_other_d0.006
r_gen_planes_other0.002
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4926
Nucleic Acid Atoms
Solvent Atoms251
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
AMoREphasing