X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.52920.1 M NaAcetate, 2M Ammonium Sulfate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.2745.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.149α = 90
b = 74.149β = 90
c = 48.815γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102003-09-09MSINGLE WAVELENGTH
21x-ray100CCDMMAD
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCHESS BEAMLINE A10.976CHESSA1
2SYNCHROTRONALS BEAMLINE 5.0.20.9199, 0.9050, 0.9202ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.45301000.06811.914.32722027220-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,21.451.51000.4663.2142706

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (I)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.4530-32656823933263597.620.167650.167650.165050.1922RANDOM17.786
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.1-0.20.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.155
r_dihedral_angle_4_deg16.943
r_dihedral_angle_3_deg12.473
r_dihedral_angle_1_deg7.387
r_sphericity_free7.292
r_scangle_it3.953
r_mcangle_it3.295
r_scbond_it3.115
r_mcbond_it2.794
r_sphericity_bonded2.679
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.155
r_dihedral_angle_4_deg16.943
r_dihedral_angle_3_deg12.473
r_dihedral_angle_1_deg7.387
r_sphericity_free7.292
r_scangle_it3.953
r_mcangle_it3.295
r_scbond_it3.115
r_mcbond_it2.794
r_sphericity_bonded2.679
r_rigid_bond_restr1.822
r_angle_refined_deg1.275
r_mcbond_other1.059
r_angle_other_deg0.753
r_symmetry_vdw_other0.256
r_symmetry_hbond_refined0.207
r_symmetry_vdw_refined0.203
r_nbd_refined0.189
r_nbd_other0.18
r_nbtor_refined0.171
r_xyhbond_nbd_refined0.171
r_chiral_restr0.085
r_nbtor_other0.079
r_xyhbond_nbd_other0.038
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1022
Nucleic Acid Atoms
Solvent Atoms103
Heterogen Atoms19

Software

Software
Software NamePurpose
REFMACrefinement
SHARPphasing