X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.72941.8M potassium phosphate, pH 8.7, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.4850.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 119.238α = 90
b = 74.764β = 115.98
c = 98.05γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 2102005-05-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.11.0ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.165098.90.04113.32.6265508265508
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.161.2940.328225138

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1KE41.16202654782654781336098.820.1090.1080.128RANDOM11.432
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.20.06-0.04-0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.689
r_dihedral_angle_4_deg15.586
r_dihedral_angle_3_deg12.724
r_sphericity_free12.609
r_dihedral_angle_1_deg6.673
r_scangle_it5.047
r_sphericity_bonded4.505
r_angle_other_deg3.763
r_scbond_it3.763
r_mcangle_it2.876
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.689
r_dihedral_angle_4_deg15.586
r_dihedral_angle_3_deg12.724
r_sphericity_free12.609
r_dihedral_angle_1_deg6.673
r_scangle_it5.047
r_sphericity_bonded4.505
r_angle_other_deg3.763
r_scbond_it3.763
r_mcangle_it2.876
r_angle_refined_deg2.017
r_mcbond_it1.983
r_rigid_bond_restr1.834
r_mcbond_other0.899
r_nbd_refined0.278
r_symmetry_vdw_other0.278
r_symmetry_hbond_refined0.269
r_xyhbond_nbd_refined0.229
r_nbd_other0.203
r_nbtor_refined0.199
r_chiral_restr0.137
r_symmetry_vdw_refined0.133
r_nbtor_other0.11
r_bond_refined_d0.022
r_gen_planes_refined0.011
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5853
Nucleic Acid Atoms
Solvent Atoms1135
Heterogen Atoms76

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction