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Crystal structure of hydrolase haloacid dehalogenase-like family (np_662590.1) from Chlorobium tepidum TLS at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 8.5 277 0.2M MgCl2, 30.0% PEG-4000, 0.1M TRIS, pH 8.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.01 38.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.75 α = 90 b = 71.59 β = 90 c = 83.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2006-06-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837, 0.97915, 0.97929 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 27.951 92.2 0.069 8.1 21098 25.562
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 72.7 0.477 1.6 2718
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 27.951 21060 1084 97.65 0.192 0.189 0.1954 0.247 0.2496 RANDOM 19.764
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.23 -0.52 -1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.064 r_dihedral_angle_4_deg 18.147 r_dihedral_angle_3_deg 11.989 r_dihedral_angle_1_deg 7.139 r_scangle_it 3.195 r_scbond_it 2.231 r_angle_refined_deg 1.366 r_mcangle_it 1.268 r_mcbond_it 0.955 r_angle_other_deg 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.064 r_dihedral_angle_4_deg 18.147 r_dihedral_angle_3_deg 11.989 r_dihedral_angle_1_deg 7.139 r_scangle_it 3.195 r_scbond_it 2.231 r_angle_refined_deg 1.366 r_mcangle_it 1.268 r_mcbond_it 0.955 r_angle_other_deg 0.8 r_symmetry_vdw_other 0.244 r_nbd_refined 0.211 r_mcbond_other 0.21 r_nbd_other 0.181 r_nbtor_refined 0.176 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.163 r_nbtor_other 0.084 r_symmetry_vdw_refined 0.08 r_chiral_restr 0.076 r_metal_ion_refined 0.046 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1744 Nucleic Acid Atoms Solvent Atoms 235 Heterogen Atoms 3
Software Software Software Name Purpose MolProbity model building REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction