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Crystal Structure of alpha-Amino-beta-Carboxymuconate-epsilon-Semialdehyde-Decarboxylase (ACMSD)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.75 298 15% PEG 5000, 0.2M MgCl2, pH 8.75, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.19 43.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.557 α = 90 b = 48.107 β = 127.31 c = 110.7 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-02-17 M MAD 2 1 3 1 4 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97904, 0.97918, 0.97818, 0.98034, 0.97951 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 46.8 0.028 13.9 1.6 72711 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 22.1 0.189 1.2 1713
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.65 33.81 69090 3532 95.17 0.251 0.211 0.2085 0.251 0.2482 RANDOM 41.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.07 0.24 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.087 r_dihedral_angle_4_deg 15.444 r_dihedral_angle_3_deg 14.815 r_dihedral_angle_1_deg 5.587 r_scangle_it 2.115 r_scbond_it 1.426 r_angle_refined_deg 1.224 r_mcangle_it 1.037 r_mcbond_it 0.638 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.087 r_dihedral_angle_4_deg 15.444 r_dihedral_angle_3_deg 14.815 r_dihedral_angle_1_deg 5.587 r_scangle_it 2.115 r_scbond_it 1.426 r_angle_refined_deg 1.224 r_mcangle_it 1.037 r_mcbond_it 0.638 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.268 r_symmetry_hbond_refined 0.213 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.115 r_metal_ion_refined 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5165 Nucleic Acid Atoms Solvent Atoms 441 Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection