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Structure of empty Pheromone Binding Protein ASP1 from the Honeybee Apis mellifera L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.9 298 200 nL of a 40 mg/mL protein solution in Tris 10 mM, NaCl 25 mM, mixed with 100 nL of 2.2 M ammonium sulfate, 0.2 M ammonium iodide, pH 5.9, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.15 60.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.098 α = 90 b = 85.997 β = 90 c = 50.839 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 40 99.2 4835 4835
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.667 99
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 30 4835 4593 755 99.48 0.21818 0.21034 0.2278 0.26625 0.2831 RANDOM 72.486
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.37 -0.5 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.617 r_dihedral_angle_3_deg 14.594 r_dihedral_angle_4_deg 11.104 r_dihedral_angle_1_deg 6.126 r_scangle_it 2.887 r_mcangle_it 2.859 r_scbond_it 2.297 r_mcbond_it 2.108 r_angle_refined_deg 1.368 r_angle_other_deg 0.954
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.617 r_dihedral_angle_3_deg 14.594 r_dihedral_angle_4_deg 11.104 r_dihedral_angle_1_deg 6.126 r_scangle_it 2.887 r_mcangle_it 2.859 r_scbond_it 2.297 r_mcbond_it 2.108 r_angle_refined_deg 1.368 r_angle_other_deg 0.954 r_mcbond_other 0.594 r_symmetry_vdw_refined 0.247 r_symmetry_hbond_refined 0.243 r_nbd_refined 0.238 r_symmetry_vdw_other 0.213 r_xyhbond_nbd_refined 0.19 r_nbd_other 0.186 r_nbtor_refined 0.179 r_nbtor_other 0.087 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 907 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement ADSC data collection SCALA data scaling