X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.129820% PEG 3350, 0.2M Sodium Fluoride, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 7.10
Crystal Properties
Matthews coefficientSolvent content
2.4649.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.616α = 90
b = 59.483β = 101.59
c = 90.721γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plate2004-08-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.14499.912485
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.13.27100

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1Q8R3.144.46124851187460199.90.2490.2470.289RANDOM89.07
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.66-0.945.26-8.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.931
r_dihedral_angle_3_deg22.792
r_dihedral_angle_4_deg22.22
r_dihedral_angle_1_deg10.095
r_angle_refined_deg0.922
r_symmetry_hbond_refined0.397
r_nbtor_refined0.335
r_symmetry_vdw_refined0.312
r_nbd_refined0.304
r_xyhbond_nbd_refined0.211
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.931
r_dihedral_angle_3_deg22.792
r_dihedral_angle_4_deg22.22
r_dihedral_angle_1_deg10.095
r_angle_refined_deg0.922
r_symmetry_hbond_refined0.397
r_nbtor_refined0.335
r_symmetry_vdw_refined0.312
r_nbd_refined0.304
r_xyhbond_nbd_refined0.211
r_chiral_restr0.045
r_bond_refined_d0.004
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_scbond_it
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3474
Nucleic Acid Atoms868
Solvent Atoms2
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
CCP4data scaling
MOLREPphasing