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Crystal Structure of human TR alpha bound T3 in orthorhombic space group
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 298 1.0 M sodium cacodylate and 0.1M sodium acetate threehydrate, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.01 69.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.981 α = 90 b = 80.795 β = 90 c = 102.211 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Mirrors 2004-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 63.25 98.18 39069 39069 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.87 1.917 7.11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.87 63.25 41150 39069 2081 98.18 0.15 0.15 0.149 0.187 RANDOM 29.302
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.19 0.16
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.924 r_dihedral_angle_1_deg 6.397 r_scbond_it 4.809 r_angle_refined_deg 3.846 r_mcangle_it 2.887 r_mcbond_it 1.73 r_symmetry_vdw_refined 0.327 r_chiral_restr 0.292 r_xyhbond_nbd_refined 0.286 r_nbd_refined 0.267
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.924 r_dihedral_angle_1_deg 6.397 r_scbond_it 4.809 r_angle_refined_deg 3.846 r_mcangle_it 2.887 r_mcbond_it 1.73 r_symmetry_vdw_refined 0.327 r_chiral_restr 0.292 r_xyhbond_nbd_refined 0.286 r_nbd_refined 0.267 r_symmetry_hbond_refined 0.247 r_bond_refined_d 0.041 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2237 Nucleic Acid Atoms Solvent Atoms 427 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction