X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2DRI 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729117% PEG 3350, 0.2M sodium formate, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.8356.53

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.2α = 90
b = 46.06β = 108.22
c = 118.4γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152005-02-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X251.0357NSLSX25

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75095.10.0583.27995179951
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7488.90.3932.22.85488

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2DRI1.75075919403095.080.205020.203060.24108RANDOM25.765
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.49-0.14-0.20.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.349
r_dihedral_angle_4_deg13.867
r_dihedral_angle_3_deg13.386
r_dihedral_angle_1_deg5.511
r_scangle_it2.242
r_scbond_it1.585
r_angle_refined_deg1.172
r_mcangle_it0.989
r_mcbond_it0.914
r_angle_other_deg0.763
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.349
r_dihedral_angle_4_deg13.867
r_dihedral_angle_3_deg13.386
r_dihedral_angle_1_deg5.511
r_scangle_it2.242
r_scbond_it1.585
r_angle_refined_deg1.172
r_mcangle_it0.989
r_mcbond_it0.914
r_angle_other_deg0.763
r_symmetry_vdw_other0.297
r_symmetry_vdw_refined0.28
r_nbd_refined0.198
r_nbtor_refined0.17
r_nbd_other0.166
r_xyhbond_nbd_refined0.163
r_symmetry_hbond_refined0.142
r_mcbond_other0.137
r_nbtor_other0.082
r_chiral_restr0.071
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4725
Nucleic Acid Atoms
Solvent Atoms668
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
ADSCdata collection
XDSdata scaling
AMoREphasing