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Crystal of WDR5 (apo-form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 20-30% PEG 3350
0.1M Hepes
0.05M ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.25 45.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.76 α = 90 b = 98.06 β = 90 c = 80.79 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARMOSAIC 225 mm CCD 2006-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9763 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 28.7 96.9 52364 50745 3 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.48 1.53 84.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.48 28.7 2 50696 48119 2578 96.81 0.174 0.15916 0.15712 0.1564 0.1974 0.196 RANDOM 15.198
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.05 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.761 r_dihedral_angle_3_deg 12.34 r_dihedral_angle_4_deg 11.179 r_dihedral_angle_1_deg 7.16 r_sphericity_free 3.271 r_scangle_it 2.998 r_sphericity_bonded 2.323 r_scbond_it 2.082 r_mcangle_it 1.341 r_angle_refined_deg 1.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.761 r_dihedral_angle_3_deg 12.34 r_dihedral_angle_4_deg 11.179 r_dihedral_angle_1_deg 7.16 r_sphericity_free 3.271 r_scangle_it 2.998 r_sphericity_bonded 2.323 r_scbond_it 2.082 r_mcangle_it 1.341 r_angle_refined_deg 1.314 r_rigid_bond_restr 1.211 r_mcbond_it 0.877 r_nbtor_refined 0.3 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.178 r_symmetry_hbond_refined 0.157 r_xyhbond_nbd_refined 0.122 r_chiral_restr 0.091 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2342 Nucleic Acid Atoms Solvent Atoms 531 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection d*TREK data scaling PHASER phasing